Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCE_08045COG3637 Opacity protein and related surface antigens. (242 aa)    
Predicted Functional Partners:
MCE_01380
Hypothetical protein.
  
 
 0.818
MCE_06680
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 
 0.769
MCE_04300
Hypothetical protein.
  
     0.764
MCE_01155
Channel protein; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.751
MCE_01160
VirB6; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.751
MCE_02930
tonB/tolA protein.
  
 
 
 0.740
MCE_01255
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.715
MCE_01310
Cell surface antigen Sca2.
 
   
 0.715
MCE_05935
HemK; COG2890 Methylase of polypeptide chain release factors.
 
     0.712
MCE_05885
Conjugative transfer protein TraG.
  
     0.708
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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