Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABB34102.1 | ABB34998.1 | Syncc9605_0326 | Syncc9605_1243 | Glutamate synthase (NADPH). | GTP-binding protein TypA. | 0.708 |
ABB34102.1 | fusA | Syncc9605_0326 | Syncc9605_0321 | Glutamate synthase (NADPH). | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.852 |
ABB34102.1 | guaA | Syncc9605_0326 | Syncc9605_0046 | Glutamate synthase (NADPH). | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.792 |
ABB34997.1 | ABB34998.1 | Syncc9605_1242 | Syncc9605_1243 | Putative peptidase U32 family protein. | GTP-binding protein TypA. | 0.672 |
ABB34997.1 | ABB34999.1 | Syncc9605_1242 | Syncc9605_1244 | Putative peptidase U32 family protein. | Conserved hypothetical protein. | 0.596 |
ABB34997.1 | ABB35001.1 | Syncc9605_1242 | Syncc9605_1246 | Putative peptidase U32 family protein. | ATPase. | 0.480 |
ABB34998.1 | ABB34102.1 | Syncc9605_1243 | Syncc9605_0326 | GTP-binding protein TypA. | Glutamate synthase (NADPH). | 0.708 |
ABB34998.1 | ABB34997.1 | Syncc9605_1243 | Syncc9605_1242 | GTP-binding protein TypA. | Putative peptidase U32 family protein. | 0.672 |
ABB34998.1 | ABB34999.1 | Syncc9605_1243 | Syncc9605_1244 | GTP-binding protein TypA. | Conserved hypothetical protein. | 0.809 |
ABB34998.1 | ABB35001.1 | Syncc9605_1243 | Syncc9605_1246 | GTP-binding protein TypA. | ATPase. | 0.637 |
ABB34998.1 | der | Syncc9605_1243 | Syncc9605_2028 | GTP-binding protein TypA. | Small GTP-binding protein domain; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.651 |
ABB34998.1 | fusA | Syncc9605_1243 | Syncc9605_0321 | GTP-binding protein TypA. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.642 |
ABB34998.1 | guaA | Syncc9605_1243 | Syncc9605_0046 | GTP-binding protein TypA. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.791 |
ABB34998.1 | rplA | Syncc9605_1243 | Syncc9605_2470 | GTP-binding protein TypA. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.669 |
ABB34998.1 | rplD | Syncc9605_1243 | Syncc9605_0375 | GTP-binding protein TypA. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.635 |
ABB34998.1 | rpsI | Syncc9605_1243 | Syncc9605_0349 | GTP-binding protein TypA. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.640 |
ABB34999.1 | ABB34997.1 | Syncc9605_1244 | Syncc9605_1242 | Conserved hypothetical protein. | Putative peptidase U32 family protein. | 0.596 |
ABB34999.1 | ABB34998.1 | Syncc9605_1244 | Syncc9605_1243 | Conserved hypothetical protein. | GTP-binding protein TypA. | 0.809 |
ABB34999.1 | ABB35001.1 | Syncc9605_1244 | Syncc9605_1246 | Conserved hypothetical protein. | ATPase. | 0.671 |
ABB35001.1 | ABB34997.1 | Syncc9605_1246 | Syncc9605_1242 | ATPase. | Putative peptidase U32 family protein. | 0.480 |
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