STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB34150.1Putative epoxide hydrolase. (278 aa)    
Predicted Functional Partners:
GAB33741.1
Hypothetical protein.
  
 0.815
GAB32796.1
Putative polyketide synthase.
  
 0.803
GAB32798.1
Putative polyketide synthase.
  
 0.803
GAB32799.1
Putative polyketide synthase.
  
 0.803
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
       0.766
GAB32795.1
Putative polyketide synthase.
  
 0.733
GAB32797.1
Putative polyketide synthase.
  
 0.733
fas1
Fatty-acid synthase I.
  
 
 0.718
fas1-2
Fatty-acid synthase I.
  
 
 0.718
pks13
Polyketide synthase Pks13.
  
 0.709
Your Current Organism:
Gordonia otitidis
NCBI taxonomy Id: 1108044
Other names: G. otitidis NBRC 100426, Gordonia otitidis IFM 10032, Gordonia otitidis NBRC 100426, Gordonia otitidis str. NBRC 100426, Gordonia otitidis strain NBRC 100426, Gordonia sp. IFM 10032
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