STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB34631.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
GAB32807.1
Hypothetical protein.
  
 0.951
cofE
F420-0--gamma-glutamyl ligase.
      0.920
fbiA
LPPG--FO 2-phopspho-L-lactate transferase.
       0.856
GAB33474.1
Putative ribonuclease.
   
 0.809
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
 0.713
GAB32255.1
Putative ATP-dependent RNA helicase.
    
 0.708
deaD
ATP-dependent DEAD-box RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
 0.708
GAB35743.1
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.708
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  0.677
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II.
   
  0.677
Your Current Organism:
Gordonia otitidis
NCBI taxonomy Id: 1108044
Other names: G. otitidis NBRC 100426, Gordonia otitidis IFM 10032, Gordonia otitidis NBRC 100426, Gordonia otitidis str. NBRC 100426, Gordonia otitidis strain NBRC 100426, Gordonia sp. IFM 10032
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