STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB36936.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
GAB32293.1
Hypothetical protein.
  
     0.675
GAB35192.1
Putative F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.652
GAB33002.1
Putative oxidoreductase.
  
     0.626
GAB34122.1
Hypothetical protein.
  
     0.606
GAB36937.1
Hypothetical protein.
       0.605
GAB34035.1
Hypothetical protein.
 
     0.538
GAB35604.1
Putative F420-dependent oxidoreductase.
  
     0.533
fbiA
LPPG--FO 2-phopspho-L-lactate transferase.
  
  
  0.531
GAB33496.1
Hypothetical protein.
   
    0.519
GAB35613.1
Hypothetical protein.
  
     0.512
Your Current Organism:
Gordonia otitidis
NCBI taxonomy Id: 1108044
Other names: G. otitidis NBRC 100426, Gordonia otitidis IFM 10032, Gordonia otitidis NBRC 100426, Gordonia otitidis str. NBRC 100426, Gordonia otitidis strain NBRC 100426, Gordonia sp. IFM 10032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.