STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB88644.1Putative peroxidase. (345 aa)    
Predicted Functional Partners:
GAB88645.1
Putative bacteriocin.
 
   
 0.954
GAB93941.1
Hypothetical protein.
  
  
 0.845
GAB88643.1
Hypothetical protein.
       0.796
GAB93299.1
Hypothetical protein.
  
    0.782
GAB93940.1
Hypothetical protein.
  
  
 0.770
GAB89449.1
Putative acetyl-CoA carboxylase beta chain.
  
 
  0.748
GAB88646.1
Putative 4-hydroxybutyrate CoA-transferase.
    
  0.690
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.676
tatB
Sec-independent protein translocase protein TatB homolog; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
  
  
 0.672
GAB88647.1
Putative ABC transporter permease/ATP-binding protein.
       0.648
Your Current Organism:
Gordonia rhizosphera
NCBI taxonomy Id: 1108045
Other names: G. rhizosphera NBRC 16068, Gordonia rhizosphera NBRC 16068, Gordonia rhizosphera str. NBRC 16068, Gordonia rhizosphera strain NBRC 16068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.