STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAB92663.1Hypothetical protein. (413 aa)    
Predicted Functional Partners:
mmsA
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.882
mmsB
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 
0.840
GAB92682.1
Hypothetical protein.
  
 
 
0.823
mmsA-2
Methylmalonate-semialdehyde dehydrogenase.
 
 
  0.817
GAB92689.1
Putative oxidoreductase.
  
  
 0.808
accA-2
acyl-CoA carboxylase alpha chain.
  
 
  0.800
accA-4
acyl-CoA carboxylase alpha chain.
  
 
  0.799
GAB90833.1
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
  0.796
GAB93342.1
Putative acyl-CoA oxidase.
   
 
  0.792
acs-2
acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
  0.785
Your Current Organism:
Gordonia rhizosphera
NCBI taxonomy Id: 1108045
Other names: G. rhizosphera NBRC 16068, Gordonia rhizosphera NBRC 16068, Gordonia rhizosphera str. NBRC 16068, Gordonia rhizosphera strain NBRC 16068
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