Pc22g17390 protein (Penicillium rubens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Pc22g17390

Pc22g17390 protein. (286 aa)

Predicted Functional Partners:

sconB

0.819

Pc21g18840

0.717

Pc20g07780

0.660

Pc22g18340

0.626

Pc21g10080

0.602

Pc18g04080

0.563

Pc18g04090

0.563

Pc22g15870

0.561

Pc_m0120

0.546

Pc13g00380

0.530

Your Current Organism:

Penicillium rubens

NCBI taxonomy Id: 500485
Other names: P. rubens Wisconsin 54-1255, Penicillium rubens Wisconsin 54-1255

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Pc13g00380	Pc18g04080	B6H183	B6HBH2	Uncharacterized protein.	Pc18g04080 protein.	0.916
Pc13g00380	Pc18g04090	B6H183	B6HBH3	Uncharacterized protein.	Pc18g04090 protein.	0.916
Pc13g00380	Pc20g07780	B6H183	B6HEL0	Uncharacterized protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.955
Pc13g00380	Pc21g10080	B6H183	B6HI26	Uncharacterized protein.	Pc21g10080 protein.	0.960
Pc13g00380	Pc21g18840	B6H183	B6HI83	Uncharacterized protein.	Pc21g18840 protein.	0.962
Pc13g00380	Pc22g17390	B6H183	B6HSU4	Uncharacterized protein.	Pc22g17390 protein.	0.530
Pc13g00380	Pc22g18340	B6H183	B6HUK6	Uncharacterized protein.	Pc22g18340 protein.	0.970
Pc13g00380	Pc_m0120	B6H183	H9CNR6	Uncharacterized protein.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.993
Pc18g04080	Pc13g00380	B6HBH2	B6H183	Pc18g04080 protein.	Uncharacterized protein.	0.916
Pc18g04080	Pc18g04090	B6HBH2	B6HBH3	Pc18g04080 protein.	Pc18g04090 protein.	0.400
Pc18g04080	Pc20g07780	B6HBH2	B6HEL0	Pc18g04080 protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
Pc18g04080	Pc21g10080	B6HBH2	B6HI26	Pc18g04080 protein.	Pc21g10080 protein.	0.999
Pc18g04080	Pc21g18840	B6HBH2	B6HI83	Pc18g04080 protein.	Pc21g18840 protein.	0.999
Pc18g04080	Pc22g17390	B6HBH2	B6HSU4	Pc18g04080 protein.	Pc22g17390 protein.	0.563
Pc18g04080	Pc22g18340	B6HBH2	B6HUK6	Pc18g04080 protein.	Pc22g18340 protein.	0.999
Pc18g04080	Pc_m0120	B6HBH2	H9CNR6	Pc18g04080 protein.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.960
Pc18g04090	Pc13g00380	B6HBH3	B6H183	Pc18g04090 protein.	Uncharacterized protein.	0.916
Pc18g04090	Pc18g04080	B6HBH3	B6HBH2	Pc18g04090 protein.	Pc18g04080 protein.	0.400
Pc18g04090	Pc20g07780	B6HBH3	B6HEL0	Pc18g04090 protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.990
Pc18g04090	Pc21g10080	B6HBH3	B6HI26	Pc18g04090 protein.	Pc21g10080 protein.	0.991