STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPR20550.1Type III secretion protein HrpD. (193 aa)    
Predicted Functional Partners:
CPR20548.1
Type III secretion cytoplasmic protein (YscL).
     
 0.809
CPR20552.1
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
     
 0.796
CPR20554.1
Hypothetical protein.
       0.790
CPR20556.1
Hrp pili protein hrpA (TTSS pilin hrpA).
       0.605
Your Current Organism:
Brenneria goodwinii
NCBI taxonomy Id: 1109412
Other names: B. goodwinii, BCC 845, Brenneria goodwinii Denman et al. 2012, Brenneria sp. LMG 26270, Brenneria sp. LMG 26271, Brenneria sp. LMG 26272, Brenneria sp. R-43476, Brenneria sp. R-43477, Brenneria sp. R-43479, Brenneria sp. R-43654, Brenneria sp. R-43655, Brenneria sp. R-43657, FRB 141, LMG 26270, LMG:26270, NCPPB 4484, strain R-43656
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.