STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00022Upf2 domain-containing protein. (205 aa)    
Predicted Functional Partners:
PIIN_02244
Smg4_UPF3 domain-containing protein.
   
 0.973
PIIN_06397
Related to Y14, exon junction complex.
    
 0.972
PIIN_00021
Related to NMD2-Nonsense-mediated mRNA decay protein 2.
 
     0.919
PIIN_01057
Related to poly(A) binding protein II.
    
 0.912
PIIN_11874
PWI domain-containing protein.
    
 
 0.908
PIIN_02332
Probable NAM7-nonsense-mediated mRNA decay protein, ATP-dependent RNA helicase.
   
 0.888
PIIN_02331
Probable NAM7-nonsense-mediated mRNA decay protein, ATP-dependent RNA helicase.
   
 0.888
PIIN_07699
Related to regulator of nonsense transcripts 1.
   
 0.888
PIIN_01659
AAA_12 domain-containing protein.
   
 0.850
PIIN_02290
Related to NAM7-nonsense-mediated mRNA decay protein (RdRP).
   
 0.850
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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