STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00303Related to PUS7-pseudouridine synthase. (812 aa)    
Predicted Functional Partners:
PIIN_04154
Related to MRPL10-mitochondrial ribosomal protein, large subunit.
   
   0.929
PIIN_04305
G domain-containing protein.
   
   0.925
PIIN_09819
Probable MRPL23-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL13 family.
   
   0.925
PIIN_01766
Related to mitochondrial ribosomal protein YmL8; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.922
PIIN_03989
L51_S25_CI-B8 domain-containing protein.
   
   0.917
PIIN_05688
Related to MSS1-Mitochondrial GTPase involved in expression of COX1.
   
   0.917
PIIN_00412
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.915
PIIN_04936
Uncharacterized protein.
    
   0.915
PIIN_05350
Related to MRPL9-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL3 family.
    
   0.915
PIIN_02720
Probable ribosomal protein L26.
   
   0.909
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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