STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00388Probable RPL43B-60S large subunit ribosomal protein. (92 aa)    
Predicted Functional Partners:
PIIN_00972
Probable mrna export factor elf1.
   
   0.989
PIIN_02378
Probable YEF3-translation elongation factor eEF3.
   
   0.989
PIIN_03006
Probable ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 0.959
PIIN_01772
Probable 60s ribosomal protein L21-A.
  
 
 0.942
PIIN_09135
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.942
PIIN_00452
Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.937
PIIN_02221
Probable ribosomal protein L24.e.A, cytosolic.
   
 
 0.937
PIIN_03011
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.937
PIIN_04268
Probable RPS19B-ribosomal protein S19.e, cytosolic.
   
 
 0.937
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.937
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.