STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00389Uncharacterized protein. (380 aa)    
Predicted Functional Partners:
PIIN_00345
Related to cleavage and polyadenylation specificity factor, 160 kDa subunit.
   
 0.937
PIIN_00148
Related to PFS2-polyadenylation factor I subunit 2.
   
 0.932
PIIN_00990
Fip1 domain-containing protein.
    
 0.932
PIIN_02923
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.932
PIIN_06612
Related to Symplekin.
   
 0.932
PIIN_05073
Related to RNA14-component of pre-mRNA 3`-end processing factor CF I.
   
 0.930
PIIN_05048
Probable SSU72-Nuclear zinc-finger motif containing protein.
   
 0.926
PIIN_05584
Related to YSH1-component of pre-mRNA polyadenylation factor PF I.
   
 0.926
PIIN_03809
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
    
 0.922
PIIN_02615
Related to MPE1-Role in mRNA 3` end formation.
    
 0.907
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.