STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00419Related to Drosophila pumilio protein and Mpt5p protein. (980 aa)    
Predicted Functional Partners:
PIIN_10784
Probable CCR4-NOT transcription complex, subunit 7.
    
 
 0.761
PIIN_08502
Probable ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.
    
 
 0.709
PIIN_05729
Related to CCR4-component of the major cytoplasmic deadenylase (C-terminal).
    
 
 0.687
PIIN_01226
PUM-HD domain-containing protein.
    
 
 0.649
PIIN_04895
Probable puff-specific nuclear protein Bx42.
    
  0.639
PIIN_02947
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
   0.632
PIIN_01277
Probable protein CCN1-putative cell cycle control protein.
    
  0.610
PIIN_03724
Related to Pre-mRNA-splicing factor RBM22.
     
 0.608
PIIN_01225
Related to GTPase-activating protein of the rho/rac family (LRG1 protein).
    
 
 0.555
PIIN_02087
Related to GTPase-activating protein of the rho/rac family (LRG1 protein).
    
 
 0.555
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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