STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00587Related to ubiquitin protein ligase e3. (1005 aa)    
Predicted Functional Partners:
PIIN_07554
Related to rat ubiquitin ligase Nedd4.
   
 
0.849
PIIN_03333
Related to UBI4-Ubiquitin.
   
 0.833
PIIN_04265
Related to UBI4-Ubiquitin.
   
 0.833
PIIN_03140
AN1-type domain-containing protein.
   
 0.775
PIIN_09216
Probable Ubiquitin conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.757
PIIN_07364
Probable RPN11-26S proteasome regulatory subunit.
    
 
 0.751
PIIN_03767
Related to UBC5-E2 ubiquitin-conjugating enzyme.
    
 0.696
PIIN_07710
Related to UFD2-ubiquitin fusion degradation protein.
   
 
 0.689
PIIN_05762
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 
 0.661
PIIN_02297
Related to ubiquitin-activating enzyme.
   
 
 0.635
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.