STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00621Related to endo-polygalacturonase. (354 aa)    
Predicted Functional Partners:
PIIN_10741
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.854
PIIN_00890
Probable pectate lyase 1.
     
 0.839
PIIN_05744
Probable PHO81-cyclin-dependent kinase inhibitor.
    
 0.808
PIIN_05792
Probable CTP1-Mitochondrial citrate transporter-member of the mitochondrial carrier (MCF) family; Belongs to the mitochondrial carrier (TC 2.A.29) family.
     
 0.798
PIIN_02585
Related to ribonucleases; Belongs to the RNase T2 family.
     
 0.788
PIIN_06680
MAGE domain-containing protein.
     
 0.786
PIIN_06586
Uncharacterized protein; Belongs to the complex I LYR family.
    
 0.738
PIIN_01772
Probable 60s ribosomal protein L21-A.
   
   0.718
PIIN_07364
Probable RPN11-26S proteasome regulatory subunit.
    
 0.715
PIIN_09750
Probable pectate lyase.
    
  0.705
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.