STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00805Related to Pol-like protein-Ciona intestinalis. (713 aa)    
Predicted Functional Partners:
PIIN_08305
Related to APN1 AP endonuclease.
    
 0.941
PIIN_06990
Related to DNA-(Apurinic or apyrimidinic site) lyase, putative-Cryptococcus neoformans.
  
 0.897
PIIN_01285
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.891
PIIN_02523
Small nuclear ribonucleoprotein Sm D3.
   
 0.872
PIIN_04947
Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.
    
 0.870
PIIN_04296
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.858
PIIN_03689
Small nuclear ribonucleoprotein Sm D2.
   
 0.840
PIIN_01301
Related to 8-oxoguanine DNA-glycosylase.
  
 0.829
PIIN_01075
Sm domain-containing protein.
   
 0.827
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.823
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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