PIIN_00847 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_00847

Uncharacterized protein. (692 aa)

Predicted Functional Partners:

PIIN_06980

0.800

PIIN_03624

0.733

PIIN_02219

0.678

PIIN_03300

0.678

PIIN_03486

0.678

PIIN_01669

0.677

PIIN_04163

0.656

PIIN_02525

0.639

PIIN_07710

0.560

PIIN_06533

0.528

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00847	PIIN_01669	G4T6Q3	G4T952	Uncharacterized protein.	BZIP domain-containing protein.	0.677
PIIN_00847	PIIN_02219	G4T6Q3	G4TAL0	Uncharacterized protein.	Related to HSP80 heat shock protein 80.	0.678
PIIN_00847	PIIN_02525	G4T6Q3	G4TBF0	Uncharacterized protein.	Uncharacterized protein.	0.639
PIIN_00847	PIIN_03300	G4T6Q3	G4TDK2	Uncharacterized protein.	Uncharacterized protein.	0.678
PIIN_00847	PIIN_03486	G4T6Q3	G4TE04	Uncharacterized protein.	Flavin_Reduct domain-containing protein.	0.678
PIIN_00847	PIIN_03624	G4T6Q3	G4TED0	Uncharacterized protein.	Related to myosin V; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.733
PIIN_00847	PIIN_04163	G4T6Q3	G4TFY1	Uncharacterized protein.	Related to HSP82-Heat shock protein.	0.656
PIIN_00847	PIIN_06533	G4T6Q3	G4TMQ5	Uncharacterized protein.	Related to myosin I; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.528
PIIN_00847	PIIN_06980	G4T6Q3	G4TNX9	Uncharacterized protein.	Related to MYO1-myosin-1 isoform (Type II myosin) heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.800
PIIN_00847	PIIN_07710	G4T6Q3	G4TR10	Uncharacterized protein.	Related to UFD2-ubiquitin fusion degradation protein.	0.560
PIIN_01669	PIIN_00847	G4T952	G4T6Q3	BZIP domain-containing protein.	Uncharacterized protein.	0.677
PIIN_01669	PIIN_02525	G4T952	G4TBF0	BZIP domain-containing protein.	Uncharacterized protein.	0.659
PIIN_01669	PIIN_03624	G4T952	G4TED0	BZIP domain-containing protein.	Related to myosin V; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.659
PIIN_02219	PIIN_00847	G4TAL0	G4T6Q3	Related to HSP80 heat shock protein 80.	Uncharacterized protein.	0.678
PIIN_02219	PIIN_04163	G4TAL0	G4TFY1	Related to HSP80 heat shock protein 80.	Related to HSP82-Heat shock protein.	0.706
PIIN_02219	PIIN_06980	G4TAL0	G4TNX9	Related to HSP80 heat shock protein 80.	Related to MYO1-myosin-1 isoform (Type II myosin) heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.436
PIIN_02525	PIIN_00847	G4TBF0	G4T6Q3	Uncharacterized protein.	Uncharacterized protein.	0.639
PIIN_02525	PIIN_01669	G4TBF0	G4T952	Uncharacterized protein.	BZIP domain-containing protein.	0.659
PIIN_02525	PIIN_06980	G4TBF0	G4TNX9	Uncharacterized protein.	Related to MYO1-myosin-1 isoform (Type II myosin) heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.659
PIIN_03300	PIIN_00847	G4TDK2	G4T6Q3	Uncharacterized protein.	Uncharacterized protein.	0.678