STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00851JmjC domain-containing protein. (838 aa)    
Predicted Functional Partners:
PIIN_03089
Uncharacterized protein.
    
 0.827
PIIN_04360
annotation not available
   
 
 0.804
PIIN_06631
Related to SWI/SNF complex protein-Laccaria bicolor.
     
 0.789
PIIN_05007
Related to JHD1-JmjC domain family histone demethylase specific for H3-K36.
   
 
 0.758
PIIN_03350
Related to SFH1 subunit of the RSC complex.
    
 0.712
PIIN_03310
Probable SNF2-component of SWI/SNF global transcription activator complex.
   
 
 0.651
PIIN_09722
Uncharacterized protein.
   
 
 0.651
PIIN_03169
Histone H3; Belongs to the histone H3 family.
    
 0.641
PIIN_05629
Probable histone 3.
    
 0.641
PIIN_11789
Probable HHT1-histone H3.
    
 0.641
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.