STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_00908Sde2_N_Ubi domain-containing protein. (234 aa)    
Predicted Functional Partners:
PIIN_01813
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
    
 0.966
PIIN_05959
Related to step II splicing factor SLU7.
    
 0.945
PIIN_06585
Uncharacterized protein.
    
  0.945
PIIN_04489
Uncharacterized protein.
    
 0.925
PIIN_02029
Related to non-snRNP spliceosome component (Pre-mRNA splicing protein PRP19).
    
 
 0.915
PIIN_04604
Probable G10 protein.
    
   0.913
PIIN_07565
Probable Pre-mRNA splicing factor cwc22.
    
  0.905
PIIN_06782
Nkap_C domain-containing protein.
    
 0.902
PIIN_00332
Related to CEF1-required during G2/M transition.
    
 
 0.897
PIIN_01517
Uncharacterized protein.
    
 0.894
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.