STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01115Related to COX10-farnesyl transferase. (293 aa)    
Predicted Functional Partners:
PIIN_05213
Probable translation elongation factor eEF-1 beta chain; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.868
PIIN_03008
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.775
PIIN_00972
Probable mrna export factor elf1.
   
 
 0.679
PIIN_04476
Probable GUS1-Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.652
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
   
 
 0.637
PIIN_07355
Probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and III.
   
 
 0.637
PIIN_06973
Related to glutathione transferase omega 1; Belongs to the GST superfamily.
   
 
 0.634
PIIN_00511
Probable MES1-methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.630
PIIN_06177
Related to translation elongation factor eEF1, gamma chain.
   
 0.617
PIIN_00315
Uncharacterized protein.
    
 0.603
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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