STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01093CYCLIN domain-containing protein; Belongs to the cyclin family. (332 aa)    
Predicted Functional Partners:
PIIN_01865
Related to cyclin dependent kinase C.
    
 0.970
PIIN_11493
Uncharacterized protein.
    
 0.970
PIIN_01059
Related to CTK1-carboxy-terminal domain (CTD) kinase, alpha subunit.
    
 0.938
PIIN_01555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.909
PIIN_02959
Homeobox domain-containing protein.
    
   0.890
PIIN_02368
CID domain-containing protein.
   
 
 0.850
PIIN_03909
Related to 80 kDa nuclear cap binding protein.
   
 0.845
PIIN_07156
Related to SPT5-transcription elongation protein.
    
 0.841
PIIN_07759
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.812
PIIN_04337
Uncharacterized protein.
    
 0.800
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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