STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01112Related to TIF2-translation initiation factor eIF4A. (965 aa)    
Predicted Functional Partners:
PIIN_08861
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.946
PRT1
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.927
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.924
PIIN_06177
Related to translation elongation factor eEF1, gamma chain.
   
 
 0.913
PIIN_01157
Probable translation initiation factor eIF-2 alpha chain.
   
 0.910
PIIN_03817
Probable mago nashi protein, exon junction complex.
   
 0.904
PIIN_03638
Probable 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.897
PIIN_06397
Related to Y14, exon junction complex.
    
 0.897
PIIN_06139
Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.896
PIIN_09707
Probable translation initiation factor eIF-4A, exon junction complex; Belongs to the DEAD box helicase family.
  
0.890
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.