STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01297bVLRF1 domain-containing protein. (645 aa)    
Predicted Functional Partners:
PIIN_04051
Probable CDC48-Microsomal protein of CDC48/PAS1/SEC18 family of ATPases; Belongs to the AAA ATPase family.
   
 
 0.915
PIIN_04750
Related to AFG2-ATPase of the CDC48/PAS1/SEC18 (AAA) family.
   
 
 0.880
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
    
   0.829
PIIN_01963
Related to TOB3 (Member of AAA-ATPase family).
   
 
 0.809
PIIN_01749
Probable RPL3-60s ribosomal protein l3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.654
PIIN_00914
Probable RPP0-acidic ribosomal protein L10.e.
    
 
 0.639
PIIN_00840
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
    
   0.638
PIIN_01236
Probable 60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.638
PIIN_02822
Probable RPL30-60S large subunit ribosomal protein L30.e.
    
   0.638
PIIN_03002
Probable 60S ribosomal protein L32.
    
   0.638
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.