STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01319HMG box domain-containing protein. (734 aa)    
Predicted Functional Partners:
PIIN_02932
Protein disulfide-isomerase.
    
   0.643
PIIN_03248
Uridine kinase; Belongs to the uridine kinase family.
    
 0.617
PIIN_07767
Probable FUR1-uracil phosphoribosyltransferase.
    
 0.617
PIIN_01722
Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.
    
 0.617
PIIN_08033
Related to NRK1-Nicotinamide riboside kinase.
    
 0.585
PIIN_02385
HMG box domain-containing protein.
    
 0.581
PIIN_11780
Uncharacterized protein.
    
 0.581
PIIN_03716
Uncharacterized protein.
    
 0.581
PIIN_03712
Uncharacterized protein.
    
 0.581
PIIN_00573
Probable ubiquitin--protein ligase hus5; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.566
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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