STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01440Uncharacterized protein. (612 aa)    
Predicted Functional Partners:
PIIN_00885
Related to NOP15-protein involved in 60S ribosomal subunit biogenesis.
   
 
 0.999
PIIN_00691
RNA helicase.
   
 
 0.996
PIIN_03224
Related to NOC2-Crucial for intranuclear movement of ribosomal particles.
   
 
 0.994
PIIN_04759
Related to EBP2-required for pre-rRNA processing and ribosomal subunit assembly.
   
 
 0.994
PIIN_09508
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.994
PIIN_03135
Probable NOP2-nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.993
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.993
PIIN_04149
Related to protein RPF2 involved in ribosomal large subunit assembly and maintenance.
   
 
 0.993
PIIN_04246
Related to microtubule binding protein YTM1-Laccaria bicolor.
   
 
 0.993
PIIN_05178
Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis.
   
 
 0.993
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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