STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01478Related to endoglucanase c. (345 aa)    
Predicted Functional Partners:
PIIN_03426
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.819
PIIN_00528
Probable ARP5-Actin-related protein; Belongs to the actin family.
    
 0.818
PIIN_01265
Related to ITC1-subunit of Isw2 chromatin remodelling complex.
   
 0.812
PIIN_09538
Probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.
    
 0.811
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
    
 0.808
PIIN_04103
Related to probable RNA helicase MPH1.
    
 0.796
PIIN_08406
RPOL4c domain-containing protein.
    
 0.786
PIIN_04087
Probable Chromatin assembly factor 1 subunit c.
    
 0.784
PIIN_01104
Uncharacterized protein.
    
  0.783
PIIN_02619
Probable DNA-directed RNA polymerase II chain Rpb7.
    
  0.783
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.