STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_01590Related to haloacid dehalogenase, type II-Burkholderia phytofirmans. (236 aa)    
Predicted Functional Partners:
PIIN_00314
Probable malate synthase, glyoxisomal.
   
 0.839
PIIN_01085
Citrate synthase; Belongs to the citrate synthase family.
  
 0.807
PIIN_08205
Citrate synthase; Belongs to the citrate synthase family.
  
 0.807
PIIN_03439
Citrate synthase; Belongs to the citrate synthase family.
  
 0.807
PIIN_01990
Probable alcohol dehydrogenase.
   
 
 0.801
PIIN_01043
Related to acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.789
PIIN_05897
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 
 0.777
PIIN_04530
Succinate-semialdehyde dehydrogenase.
   
 0.771
PIIN_04568
Probable methylcrotonyl-CoA carboxylase beta chain, mitochondrial.
  
 0.754
PIIN_05313
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
  
 
 0.752
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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