STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02161Tyrosine--tRNA ligase. (444 aa)    
Predicted Functional Partners:
PIIN_09511
Related to Tyrosyl-tRNA synthetase.
   
 0.915
PIIN_02297
Related to ubiquitin-activating enzyme.
 
    
 0.900
PIIN_03800
Probable TYS1-tyrosyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.878
PIIN_04896
Tryptophan synthase.
  
  
 0.852
PIIN_08833
Probable arginyl-tRNA synthetase, cytosolic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.819
PIIN_05442
Probable methionyl-tRNA synthetase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.801
PIIN_00511
Probable MES1-methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.801
PIIN_05793
Probable CDC60-leucine--tRNA ligase, cytosolic.
  
 
 0.769
PIIN_07173
Probable glycine--tRNA ligase GRS1.
  
  
 0.768
PIIN_01406
Probable VAS1-valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.764
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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