PIIN_02185 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_02185

U1-type domain-containing protein. (223 aa)

Predicted Functional Partners:

PIIN_03064

0.997

PIIN_00949

0.993

PIIN_06399

0.988

PIIN_08658

0.987

PIIN_07270

0.985

PIIN_03890

0.983

PIIN_01388

0.978

PIIN_00167

0.970

LSM3

0.968

PIIN_03378

0.963

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	PIIN_00167	G4T5M4	G4T569	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Related to snRNP protein.	0.999
LSM3	PIIN_00949	G4T5M4	G4T725	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.994
LSM3	PIIN_01388	G4T5M4	G4T8B6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.981
LSM3	PIIN_02185	G4T5M4	G4TAG8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1-type domain-containing protein.	0.968
LSM3	PIIN_03064	G4T5M4	G4TCW2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Related to microfibril-associated protein.	0.715
LSM3	PIIN_03378	G4T5M4	G4TDV4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Related to U4/U6 snRNP-associated 61 kDa protein.	0.994
LSM3	PIIN_03890	G4T5M4	G4TF57	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable pre-mRNA splicing factor prp1.	0.972
LSM3	PIIN_06399	G4T5M4	G4TMC1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Probable ATP dependent RNA helicase.	0.987
LSM3	PIIN_07270	G4T5M4	G4TPS2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.719
LSM3	PIIN_08658	G4T5M4	G4TTQ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.531
PIIN_00167	LSM3	G4T569	G4T5M4	Related to snRNP protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
PIIN_00167	PIIN_00949	G4T569	G4T725	Related to snRNP protein.	Uncharacterized protein.	0.992
PIIN_00167	PIIN_01388	G4T569	G4T8B6	Related to snRNP protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.973
PIIN_00167	PIIN_02185	G4T569	G4TAG8	Related to snRNP protein.	U1-type domain-containing protein.	0.970
PIIN_00167	PIIN_03064	G4T569	G4TCW2	Related to snRNP protein.	Related to microfibril-associated protein.	0.745
PIIN_00167	PIIN_03378	G4T569	G4TDV4	Related to snRNP protein.	Related to U4/U6 snRNP-associated 61 kDa protein.	0.975
PIIN_00167	PIIN_03890	G4T569	G4TF57	Related to snRNP protein.	Probable pre-mRNA splicing factor prp1.	0.973
PIIN_00167	PIIN_06399	G4T569	G4TMC1	Related to snRNP protein.	Probable ATP dependent RNA helicase.	0.990
PIIN_00167	PIIN_07270	G4T569	G4TPS2	Related to snRNP protein.	Uncharacterized protein.	0.743
PIIN_00167	PIIN_08658	G4T569	G4TTQ5	Related to snRNP protein.	Uncharacterized protein.	0.590