STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02287Related to tRNA dihydrouridine synthase. (433 aa)    
Predicted Functional Partners:
PIIN_03497
Related to catalytic subunit of an adoMet-dependent tRNA methyltransferase complex (Trm11p-Trm112p).
   
  
 0.828
PIIN_03596
Related to S. pombe beta-transducin.
   
   0.800
PIIN_06421
Uncharacterized protein.
 
      0.800
PIIN_01654
Related to SAS10-involved in silencing.
   
    0.737
PIIN_05178
Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis.
   
    0.716
PIIN_11712
Related to RPF1-involved in the assembly of the large ribosomal subunit.
   
    0.713
PIIN_00010
Probable IMP4-component of the U3 small nucleolar ribonucleoprotein.
   
    0.708
PIIN_01163
Related to NOC4-ribosome biogenesis protein.
   
    0.708
PIIN_03812
Proteasome subunit beta; Belongs to the peptidase T1B family.
 
      0.703
PIIN_03224
Related to NOC2-Crucial for intranuclear movement of ribosomal particles.
   
    0.686
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.