STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02503Matrin-type domain-containing protein. (323 aa)    
Predicted Functional Partners:
PIIN_03378
Related to U4/U6 snRNP-associated 61 kDa protein.
    
 0.960
PIIN_06399
Probable ATP dependent RNA helicase.
    
 
 0.935
PIIN_04861
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.924
PIIN_09433
Probable U6 snRNA-associated Sm-like protein LSm6.
    
 0.924
PIIN_00949
Uncharacterized protein.
    
 0.916
PIIN_02185
U1-type domain-containing protein.
   
 0.912
PIIN_03890
Probable pre-mRNA splicing factor prp1.
    
 0.908
PIIN_04674
Related to PRP4-U4/U6 small nuclear ribonucleoprotein.
    
  0.908
PIIN_03064
Related to microfibril-associated protein.
   
 0.906
PIIN_07270
Uncharacterized protein.
   
 0.904
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.