STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02857Related to SAD1-SnRNP assembly defective. (569 aa)    
Predicted Functional Partners:
PIIN_08095
Probable ribosomal elongation factor EF-2.
   
 0.983
PIIN_01618
Probable splicing factor PRP8 (U5 snRNP).
  
 0.973
PIIN_00949
Uncharacterized protein.
    
 0.964
PIIN_03378
Related to U4/U6 snRNP-associated 61 kDa protein.
    
 0.963
PIIN_06736
Probable U5 snRNP 100 kD protein; Belongs to the DEAD box helicase family.
   
 0.957
PIIN_03121
SNRNP27 domain-containing protein.
   
 0.949
PIIN_04674
Related to PRP4-U4/U6 small nuclear ribonucleoprotein.
    
 0.943
PIIN_03775
Related to U4/U6 small nuclear ribonucleoprotein hPrp3.
   
 0.935
PIIN_03890
Probable pre-mRNA splicing factor prp1.
    
 0.922
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.914
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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