STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02930Probable glutamine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (846 aa)    
Predicted Functional Partners:
PIIN_01173
Probable proline-tRNA ligase.
 
 0.997
PIIN_09511
Related to Tyrosyl-tRNA synthetase.
 
 0.992
PIIN_02186
Probable ILS1-isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.988
PIIN_02822
Probable RPL30-60S large subunit ribosomal protein L30.e.
   
 0.988
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
   
 0.988
PIIN_00840
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.987
PIIN_01236
Probable 60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.985
PIIN_01772
Probable 60s ribosomal protein L21-A.
   
 0.985
PIIN_00511
Probable MES1-methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.985
PIIN_00972
Probable mrna export factor elf1.
   
 
 0.984
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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