STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_02938Related to RRS1-regulator of ribosome biogenesis. (668 aa)    
Predicted Functional Partners:
PIIN_08258
Uncharacterized protein.
    
 0.995
PIIN_01704
Probable KIN28-cyclin-dependent ser/thr protein kinase; Belongs to the protein kinase superfamily.
   
 0.994
PIIN_09355
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.994
PIIN_02737
Probable 25 kD subunit of DNA-directed RNA polymerases I, II and III.
    
 0.993
PIIN_00226
Uncharacterized protein.
    
 0.992
PIIN_01403
Related to RPB3-DNA-directed RNA polymerase II chain.
   
 0.991
PIIN_02619
Probable DNA-directed RNA polymerase II chain Rpb7.
   
 0.991
PIIN_07686
Related to TFA1-TFIIE subunit (Transcription initiation factor), 66 kD.
    
 0.991
PIIN_03154
Probable SSL2-DNA helicase.
    
 0.990
PIIN_08406
RPOL4c domain-containing protein.
    
 0.990
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.