STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03016Related to cell cycle control protein cwf25. (408 aa)    
Predicted Functional Partners:
PIIN_01813
Probable CDC40-Pre-mRNA splicing factor important for catalytic step II.
    
 0.995
PIIN_05114
Related to YJU2-Essential nuclear protein, putative spliceosomal component.
   
 0.993
PIIN_01549
Probable PRP16-RNA-dependent ATPase.
    
 0.989
PIIN_00332
Related to CEF1-required during G2/M transition.
    
 
 0.988
PIIN_06399
Probable ATP dependent RNA helicase.
    
 
 0.987
PIIN_07565
Probable Pre-mRNA splicing factor cwc22.
   
 0.987
PIIN_04604
Probable G10 protein.
    
 
 0.986
PIIN_06585
Uncharacterized protein.
   
 0.983
PIIN_02029
Related to non-snRNP spliceosome component (Pre-mRNA splicing protein PRP19).
    
 
 0.982
PIIN_04882
Related to CWC2-involved in mRNA splicing.
   
 
 0.982
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.