PIIN_03010 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_03010

Uncharacterized protein. (188 aa)

Predicted Functional Partners:

PIIN_02427

0.901

PIIN_01877

0.895

PIIN_02994

0.892

PIIN_08607

0.886

PIIN_02776

0.876

PIIN_03329

0.875

PIIN_09819

0.870

PIIN_02860

0.865

PIIN_05350

0.861

PIIN_07365

0.857

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_01877	PIIN_02427	G4T9L7	G4TB79	Uncharacterized protein.	Related to 50S ribosomal protein L4.	0.990
PIIN_01877	PIIN_02776	G4T9L7	G4TC73	Uncharacterized protein.	Related to MRPL17-mitochondrial ribosomal protein, large subunit.	0.973
PIIN_01877	PIIN_02860	G4T9L7	G4TCE6	Uncharacterized protein.	Probable mitochondrial aconitate hydratase.	0.975
PIIN_01877	PIIN_02994	G4T9L7	G4TCQ1	Uncharacterized protein.	Uncharacterized protein.	0.989
PIIN_01877	PIIN_03010	G4T9L7	G4TCT4	Uncharacterized protein.	Uncharacterized protein.	0.895
PIIN_01877	PIIN_03329	G4T9L7	G4TDN6	Uncharacterized protein.	Uncharacterized protein.	0.969
PIIN_01877	PIIN_05350	G4T9L7	G4TJB7	Uncharacterized protein.	Related to MRPL9-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL3 family.	0.983
PIIN_01877	PIIN_07365	G4T9L7	G4TQ24	Uncharacterized protein.	Uncharacterized protein.	0.971
PIIN_01877	PIIN_08607	G4T9L7	G4TTL3	Uncharacterized protein.	Related to MRPL3-Mitochondrial ribosomal protein, large subunit.	0.984
PIIN_01877	PIIN_09819	G4T9L7	G4TWY8	Uncharacterized protein.	Probable MRPL23-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL13 family.	0.982
PIIN_02427	PIIN_01877	G4TB79	G4T9L7	Related to 50S ribosomal protein L4.	Uncharacterized protein.	0.990
PIIN_02427	PIIN_02776	G4TB79	G4TC73	Related to 50S ribosomal protein L4.	Related to MRPL17-mitochondrial ribosomal protein, large subunit.	0.987
PIIN_02427	PIIN_02860	G4TB79	G4TCE6	Related to 50S ribosomal protein L4.	Probable mitochondrial aconitate hydratase.	0.982
PIIN_02427	PIIN_02994	G4TB79	G4TCQ1	Related to 50S ribosomal protein L4.	Uncharacterized protein.	0.988
PIIN_02427	PIIN_03010	G4TB79	G4TCT4	Related to 50S ribosomal protein L4.	Uncharacterized protein.	0.901
PIIN_02427	PIIN_03329	G4TB79	G4TDN6	Related to 50S ribosomal protein L4.	Uncharacterized protein.	0.993
PIIN_02427	PIIN_05350	G4TB79	G4TJB7	Related to 50S ribosomal protein L4.	Related to MRPL9-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL3 family.	0.998
PIIN_02427	PIIN_07365	G4TB79	G4TQ24	Related to 50S ribosomal protein L4.	Uncharacterized protein.	0.987
PIIN_02427	PIIN_08607	G4TB79	G4TTL3	Related to 50S ribosomal protein L4.	Related to MRPL3-Mitochondrial ribosomal protein, large subunit.	0.986
PIIN_02427	PIIN_09819	G4TB79	G4TWY8	Related to 50S ribosomal protein L4.	Probable MRPL23-mitochondrial ribosomal protein, large subunit; Belongs to the universal ribosomal protein uL13 family.	0.997