STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03013Related to endo-1,3(4)-beta-glucanase. (373 aa)    
Predicted Functional Partners:
PIIN_10351
Related to splicing factor U2AF 35 kd subunit.
   
 0.902
PIIN_06800
Related to SNP1-U1 small nuclear ribonucleoprotein.
   
 0.879
PIIN_00332
Related to CEF1-required during G2/M transition.
   
 0.836
PIIN_02029
Related to non-snRNP spliceosome component (Pre-mRNA splicing protein PRP19).
   
 0.808
PIIN_03689
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.795
PIIN_03153
Probable MSL5-branch point bridging protein.
   
 
 0.794
PIIN_03422
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.788
PIIN_01075
Sm domain-containing protein.
   
 
 0.787
PIIN_05306
Probable splicing factor 3b subunit 1.
   
 
 0.777
PIIN_01763
Uncharacterized protein.
   
   0.772
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.