STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03072Related to PUB1-major polyadenylated RNA-binding protein of nucleus and cytoplasm. (415 aa)    
Predicted Functional Partners:
PIIN_01057
Related to poly(A) binding protein II.
  
 0.816
PIIN_00517
Related to translation initiation factor eIF-4E; Belongs to the eukaryotic initiation factor 4E family.
   
 0.803
PIIN_03909
Related to 80 kDa nuclear cap binding protein.
    
 0.786
PIIN_00698
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
  
0.785
PIIN_00118
MI domain-containing protein.
   
 0.770
PIIN_04009
Related to translation initiation factor eIF-4F.
   
 0.770
PIIN_02523
Small nuclear ribonucleoprotein Sm D3.
   
 0.745
PIIN_00432
Related to small nuclear ribonucleoprotein snRNP U1A.
    
 0.733
PIIN_05257
Related to small nuclear ribonucleoprotein U2B` (U2 small nuclear RNA-associated protein B`).
    
 0.733
PIIN_09707
Probable translation initiation factor eIF-4A, exon junction complex; Belongs to the DEAD box helicase family.
   
 0.725
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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