STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03274G-patch domain-containing protein. (383 aa)    
Predicted Functional Partners:
PIIN_03835
Probable PRP43-involved in spliceosome disassembly.
   
 
 0.973
PIIN_05178
Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis.
   
   0.967
PIIN_08416
Related to UTP7-U3 snoRNP protein.
   
   0.967
PIIN_01336
Probable NOP1-fibrillarin.
   
   0.959
PIIN_02255
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.957
PIIN_01649
Related to osmosensing protein SGD1.
   
   0.955
PIIN_07382
Related to NSR1-nuclear localization sequence binding protein.
   
 
 0.955
PIIN_09707
Probable translation initiation factor eIF-4A, exon junction complex; Belongs to the DEAD box helicase family.
   
 
 0.954
PIIN_09425
Probable ATP dependent RNA helicase.
   
 
 0.951
PIIN_04257
Uncharacterized protein.
    
 
 0.948
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.