STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03605Related to MRP7-mitochondrial ribosomal protein, large subunit. (159 aa)    
Predicted Functional Partners:
PIIN_01410
Uncharacterized protein.
  
 
 0.999
PIIN_01827
Uncharacterized protein.
  
 
 0.999
PIIN_11773
Uncharacterized protein.
  
 
 0.999
PIIN_02480
Uncharacterized protein.
  
 
 0.999
PIIN_03329
Uncharacterized protein.
  
 
 0.999
PIIN_05921
Related to 30S ribosomal protein S16.
  
 
 0.999
PIIN_05941
Related to MRPS9-mitochondrial ribosomal protein, small subunit; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.999
PIIN_06139
Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.999
PIIN_09589
Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.999
PIIN_01766
Related to mitochondrial ribosomal protein YmL8; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.999
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.