STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03623OTU domain-containing protein. (288 aa)    
Predicted Functional Partners:
PIIN_07554
Related to rat ubiquitin ligase Nedd4.
      
 0.579
PIIN_03722
Related to OTU1-Yeast OTU Deubiquitinating enzyme 1.
      
 0.532
PIIN_09322
OTU domain-containing protein.
    
 
 0.493
PIIN_03433
Probable ubiquitin-specific processing protease 21; Belongs to the peptidase C19 family.
   
  
 0.485
PIIN_02282
USP domain-containing protein.
   
  
 0.465
PIIN_02799
USP domain-containing protein; Belongs to the peptidase C19 family.
   
  
 0.447
PIIN_11703
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.445
PIIN_04680
Related to UBP12-ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family.
      
 0.440
PIIN_00482
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.424
PIIN_02135
Ubiquitin carboxyl-terminal hydrolase.
      
 0.422
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.