PIIN_11780 protein (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PIIN_11780

Uncharacterized protein. (191 aa)

Predicted Functional Partners:

PIIN_00395

0.974

PIIN_03248

0.851

PIIN_07767

0.851

PIIN_01722

0.851

PIIN_08033

0.839

PIIN_04212

0.720

PIIN_10496

0.694

PIIN_02683

0.675

PIIN_03470

0.675

PIIN_04004

0.675

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00395	PIIN_01722	G4T5W7	G4U387	Uncharacterized protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.977
PIIN_00395	PIIN_02683	G4T5W7	G4TBX9	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.978
PIIN_00395	PIIN_03248	G4T5W7	G4TDF6	Uncharacterized protein.	Uridine kinase; Belongs to the uridine kinase family.	0.977
PIIN_00395	PIIN_03470	G4T5W7	G4TDX2	Uncharacterized protein.	Related to histone deacetylase.	0.978
PIIN_00395	PIIN_04004	G4T5W7	G4TFI3	Uncharacterized protein.	Probable HOS2-putative histone deacetylase.	0.978
PIIN_00395	PIIN_07767	G4T5W7	G4TR70	Uncharacterized protein.	Probable FUR1-uracil phosphoribosyltransferase.	0.977
PIIN_00395	PIIN_08033	G4T5W7	G4TRY6	Uncharacterized protein.	Related to NRK1-Nicotinamide riboside kinase.	0.977
PIIN_00395	PIIN_11780	G4T5W7	G4TEM6	Uncharacterized protein.	Uncharacterized protein.	0.974
PIIN_01722	PIIN_00395	G4U387	G4T5W7	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Uncharacterized protein.	0.977
PIIN_01722	PIIN_02683	G4U387	G4TBX9	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.689
PIIN_01722	PIIN_03470	G4U387	G4TDX2	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Related to histone deacetylase.	0.689
PIIN_01722	PIIN_04004	G4U387	G4TFI3	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Probable HOS2-putative histone deacetylase.	0.689
PIIN_01722	PIIN_04212	G4U387	G4TG18	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Uncharacterized protein.	0.847
PIIN_01722	PIIN_10496	G4U387	G4TYW0	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Related to D-lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.743
PIIN_01722	PIIN_11780	G4U387	G4TEM6	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	Uncharacterized protein.	0.851
PIIN_02683	PIIN_00395	G4TBX9	G4T5W7	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.978
PIIN_02683	PIIN_01722	G4TBX9	G4U387	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.689
PIIN_02683	PIIN_03248	G4TBX9	G4TDF6	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uridine kinase; Belongs to the uridine kinase family.	0.689
PIIN_02683	PIIN_03470	G4TBX9	G4TDX2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Related to histone deacetylase.	0.422
PIIN_02683	PIIN_04212	G4TBX9	G4TG18	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	Uncharacterized protein.	0.792