STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03876Usp domain-containing protein. (304 aa)    
Predicted Functional Partners:
PIIN_00395
Uncharacterized protein.
    
 0.873
PIIN_11852
Related to SKI3-protein involved in exosome mediated 3` to 5` mRNA degradation.
    
 0.781
PIIN_02594
Probable SKI2-antiviral protein and putative helicase.
    
 0.764
PIIN_00615
Related to RNA polymerase II-associated protein-Laccaria bicolor.
    
 0.712
PIIN_01708
Related to DNA-directed RNA polymerase II regulator.
   
 0.704
PIIN_00739
Probable cytochrome C; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.691
PIIN_01483
CPSF_A domain-containing protein.
    
  0.672
PIIN_02455
Related to cullin 4A; Belongs to the cullin family.
    
  0.645
PIIN_04461
Related to RNA polymerase II-associated protein-Laccaria bicolor.
    
 0.633
PIIN_06442
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
  0.633
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.