STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03914Related to pyridoxine 4-dehydrogenase. (343 aa)    
Predicted Functional Partners:
PIIN_04576
Related to pyridoxamine-phosphate oxidase.
   
 
 0.816
PIIN_04896
Tryptophan synthase.
     
 0.814
PIIN_07335
Ion_trans domain-containing protein.
    
 0.730
PIIN_01203
Uncharacterized protein.
   
 0.661
PIIN_06102
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.654
PIIN_02125
Probable SEC13-protein transport protein; Belongs to the WD repeat SEC13 family.
    
 0.650
PIIN_05987
Ribosomal protein L37; Binds to the 23S rRNA.
   
 0.589
PIIN_01149
Uncharacterized protein.
    
 0.588
PIIN_06723
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.572
PIIN_00478
Related to nuclear pore protein; Belongs to the WD repeat SEC13 family.
    
 0.559
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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