STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_03977Uncharacterized protein. (64 aa)    
Predicted Functional Partners:
PIIN_06476
Probable ubiquitin-like protein ubl1.
   
    0.818
PIIN_04473
Related to ubiquitin-like protein Hub1.
   
    0.786
PIIN_01413
PC4 domain-containing protein.
   
    0.767
PIIN_01763
Uncharacterized protein.
   
    0.757
PIIN_07858
Related to UMP1-proteasome maturation factor.
   
    0.747
PIIN_01075
Sm domain-containing protein.
   
  
 0.482
PIIN_00757
Uncharacterized protein.
   
  
 0.473
PIIN_00840
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
  
 0.451
PIIN_00222
Probable NOP10-nucleolar rRNA processing protein.
   
    0.441
PIIN_03858
Probable ribosomal protein L34.e.
   
    0.439
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.