STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04112Probable VAC8-vacuolar membrane protein, required for the cytoplasm-to-vacuole targeting. (632 aa)    
Predicted Functional Partners:
PIIN_01249
Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.
    
 
 0.953
PIIN_03591
Related to Lipase, required for intravacuolar lysis of autophagic bodies.
    
 
 0.894
PIIN_04005
Related to Lipase, required for intravacuolar lysis of autophagic bodies.
    
 
 0.894
PIIN_09603
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.666
PIIN_10546
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.666
PIIN_05652
ATG11 domain-containing protein.
    
 
 0.580
PIIN_01914
Related to YKT6-SNARE protein for Endoplasmic Reticulum-Golgi transport; Belongs to the synaptobrevin family.
    
 
 0.542
PIIN_03378
Related to U4/U6 snRNP-associated 61 kDa protein.
 
      0.507
PIIN_11857
Uncharacterized protein.
    
 
 0.506
PFA4
Palmitoyltransferase PFA4; Mediates the reversible addition of palmitate to target proteins, thereby regulating their membrane association and biological function; Belongs to the DHHC palmitoyltransferase family. PFA4 subfamily.
    
 
 0.506
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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