STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04185Related to RRN3-RNA polymerase I specific transcription factor. (854 aa)    
Predicted Functional Partners:
PIIN_02188
RPA43_OB domain-containing protein.
   
 0.998
PIIN_06751
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
PIIN_00165
Uncharacterized protein.
   
 0.992
PIIN_07355
Probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and III.
   
 0.991
PIIN_01542
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.990
PIIN_09660
BTB domain-containing protein.
   
 0.983
PIIN_02737
Probable 25 kD subunit of DNA-directed RNA polymerases I, II and III.
    
 0.982
PIIN_09538
Probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II, III.
   
 0.982
PIIN_01104
Uncharacterized protein.
   
 0.981
PIIN_04796
Uncharacterized protein.
    
 0.976
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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