STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04309Probable RNA-binding protein. (799 aa)    
Predicted Functional Partners:
PIIN_07272
Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.
   
 
 0.993
PIIN_00010
Probable IMP4-component of the U3 small nucleolar ribonucleoprotein.
   
   0.987
PIIN_05653
Probable periodic tryptophan protein PWP2.
   
 
 0.964
PIIN_03596
Related to S. pombe beta-transducin.
   
 
 0.931
PIIN_05178
Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis.
   
 
 0.929
PIIN_08475
Uncharacterized protein.
   
 
 0.924
PIIN_08416
Related to UTP7-U3 snoRNP protein.
   
   0.922
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
   0.919
PIIN_06582
RNA helicase.
   
 
 0.918
PIIN_10226
Related to Nucleolar protein NOP4.
   
 
0.918
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.