STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PIIN_04435Related to putative acetyltransferase-Clavibacter michiganensis subsp. sepedonicus. (177 aa)    
Predicted Functional Partners:
PIIN_01903
Related to ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.889
PIIN_09247
Related to HIS-3 histidine biosynthesis trifunctional protein.
    
 0.832
PIIN_09758
Probable HIS7-glutamine amidotransferase/cyclase; Belongs to the HisA/HisF family.
    
  0.823
PIIN_00057
Related to cysteinyl-tRNA synthetase.
     
 0.797
PIIN_00477
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.623
PIIN_01680
Hcy-binding domain-containing protein.
    
  0.619
PIIN_01857
Uncharacterized protein.
     
 0.547
PIIN_01889
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
     
 0.547
PIIN_03852
Related to acyl-coa dehydrogenase, long-chain specific.
     
 0.547
PIIN_04213
Uncharacterized protein.
     
 0.547
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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